So for vesys to understand this you would have to setup the terminals in the schematic disconnected from the connector. In the harness you would then get the 2 independant terminals and you can locate them by the connector with a note for your harness manufacturer to hook them up .
If you connector has pins 1 and 2 i would name the terminals similar to the connectors name. So if the connector was PC012. I would name the terminals 1PC012 AND 2 PC012 so your harness manufacturer will know how to hook it up.
Only way i could think to do this.