For those curious, I was able to correct the issue. I improperly synced the Logic/Layout libraries. I needed to go into Logic, select "sync with layout" in the library manager and then do the same thing in the Layout library manager (sync with logic).
Message was edited by: cleon - grammar/spelling
I know this is an old issue (2 years ago!). But I just wanted to say thanks. This just started happening to me and I had no idea. And in my case it seemed to be only parts from a particular library. But after synchronizing on both ends it's fixed.