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I don't have xRC experience but it sounded like "black box" extraction. when I searched for that on Supportnet I found a TechNote that referred to the xRC User Manual section called "Running Gate-Level Extraction".
Do you think that might apply?
I will check.
I am a student from Tsinghua university,this days i was facing the same problem with you. I found that the calibre pex always reported the error:noting in source,then I checked the calibre input files,and changed it with the .sp file created from the lvs. Finally,it worked. So I guess your problem may be the same. Good luck!